Research Interest

Artificial Intelligence Biology, Medical Data Mining, Social Computing, Deep Learning, Natural Language Processing, Artificial Swarm Intelligence.

Education & Professional Experience

  • Since November 2023, Associate Researcher, Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin.
  • December 2020 - October 2023, Postdoctoral Researcher, Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin.
  • November 2017- December 2019, CSC Joint PhD., The University of Queensland.
  • September 2016- December 2020, Ph.D., University of Chinese Academy of Sciences.
  • June 2014 - September 2016, M.S, Jilin University.
  • September 2009 - July 2013, Bachelor’s degree, Hebei Agricultural University.

Selected Publications

  1. Zhenkun Shi, Rui Deng, Qianqian Yuan, Zhitao Mao, Ruoyu Wang, Haoran Li, Xiaoping Liao, Hongwu Ma. Enzyme Commission Number Prediction and Benchmarking with Hierarchical Dual-core Multitask Learning Framework[J]. Research, 2023.
  2. Zhenkun Shi, Sen Wang, Lin Yue, Yijia Zhang*, Binod Kumar Adhikari, Shuai Xue, Wanli Zuo, Xue Li. Dual-Core Mutual Learning Between Scoring Systems and Clinical Features for ICU Mortality Prediction[J]. Information Sciences, 2023: 118984.
  3. Jinhui Niu, Zhitao Mao, Yufeng Mao, Ke Wu, Zhenkun Shi, Qianqian Yuan, Jingyi Cai, Hongwu Ma*. Construction and Analysis of an Enzyme-Constrained Metabolic Model of Corynebacterium glutamicum [J]. Biomolecules, 2023:1499.
  4. Qianqian Yuan, Fan Wei, Xiaogui Deng, Aonan Li, Zhenkun Shi, Zhitao Mao, Feiran Li, Hongwu Ma*. Reconstruction and metabolic profiling of the genome-scale metabolic network model of Pseudomonas stutzeri A1501 [J]. Synthetic and Systems Biotechnology, 2023.
  5. Jianqi Zhang, Shuai Ren, Zhenkui Shi, Ruoyu Wang, Haoran Li, Huijuan Tian, Miao Feng, Xiaoping Liao, Hongwu Ma*. SCP4ssd: A Serverless Platform for Nucleotide Sequence Synthesis Difficulty Prediction Using an AutoML Model [J]. Genes, 2023:14(3):605.
  6. Zhenkun Shi, Pi Liu, Xiaoping Liao, Zhitao Mao, Jianqi Zhang, Qinhong Wang, Jibin Sun, Hongwu Ma, Yanhe Ma. Data-driven synthetic cell factories development for industrial biomanufacturing [J]. BioDesign Research, 2022.
  7. Shining Liang, Wanli Zuo, Zhenkun Shi*, Sen Wang, Junhu Wang, Xianglin Zuo. A multi-level neural network for implicit causality detection in web texts [J]. Neurocomputing, 2022, 481: 121-132.
  8. Yijia Zhang, Wanli Zuo, Zhenkun Shi*, Binod Kumar Adhikari. Journal of Ambient Intelligence and Humanized Computing [J]. , 2022: 1-21.
  9. Jinhui Niu, Zhitao Mao, Yufeng Mao, Ke Wu, Zhenkun Shi, Qianqian Yuan, Jingyi Cai, Hongwu Ma. Construction and Analysis of an Enzyme-Constrained Metabolic Model of Corynebacterium glutamicum [J]. Biomolecules, 2022, 12(10): 1499.
  10. Yi Yang, Yufeng Mao, Ruoyu Wang, Haoran Li, Ye Liu, Haijiao Cheng, Zhenkun Shi, Yu Wang, Meng Wang, Ping Zheng, Xiaoping Liao, Hongwu Ma. AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms [J]. Nucleic Acids Research, 2022, 50(W1): W75-W82.